Three offices across New YorkTax planning and accounting for people who run things.

Yonkers

Nonprofit accounting in Yonkers, Westchester

Yonkers nonprofits are often large enough for a full Form 990 and staffed thinly enough that nobody owns it.

What you get

  • Form 990, 990-EZ and 990-N
  • Unrelated business income on Form 990-T
  • Restricted and unrestricted funds tracked
  • Reporting a board can read
The MyCleverCPA team outside the office

The MyCleverCPA team

  • 25+ years in regulated finance, compliance and audit
  • Tax work led by a CPA. Jillian Sinel holds the CPA and the CAA
  • Riverdale Office at 331 College Rd, Bronx, NY 10471

In Yonkers

Nonprofit accounting for Yonkers

In a city of 212,603 people the service organizations carry real payroll and real programs, which means real allocation questions between program, administration and fundraising.

We take the return and the New York State charities filing off the board agenda, and give them numbers they can govern with in between.

Scope

What is included in nonprofit

The same work wherever you are. Scoped to what you actually need.

  1. Annual filings

    • Form 990, 990-EZ and 990-N
    • Form 990-T for unrelated business income
    • New York State charities filings
  2. Fund accounting

    • Restricted and unrestricted fund tracking
    • Grant and program reporting
    • Costs allocated across program, administration and fundraising
  3. Governance and controls

    • Internal controls for volunteer-run finance
    • Separation of duties on a small team
    • Documentation a board can actually review
  4. Setting one up

    • Entity formation and the exemption application
    • A chart of accounts built to produce a 990
    • The written policies the 990 asks whether you have

What this covers

  • Form 990, 990-EZ and 990-N
  • Form 990-T for unrelated business income
  • Annual reporting and regulatory filings
  • Nonprofit structuring and entity setup
  • Bookkeeping and fund accounting
  • Board and management reporting
  • Restricted and unrestricted fund tracking
  • Internal controls for volunteer-run finance

Local tax

The only local income tax outside the city

This is the detail that makes Yonkers different from everywhere else we work. Residents pay a Yonkers income tax surcharge of 16.75% of the net state tax amount. People who work in Yonkers but live elsewhere pay a nonresident earnings tax of 0.50%, filed on Form Y-203. No other area we cover outside New York City has a municipal income tax at all; Scarsdale, four miles away, has none.

What you do not pay is just as important. There is no New York City resident income tax for Yonkers residents, including the large commuter population. The nonresident earnings tax that used to apply was repealed in 1999 and the partial version was struck down in 2000. MCTMT sits in Zone 2 at 0.34% rather than the city’s 0.60%, and with the self employment threshold moving from $50,000 to $150,000 for 2026, a lot of self employed Yonkers filers leave that tax entirely this year.

The combination worth understanding: a Yonkers resident consultant with New York City clients can face state tax, the 16.75% Yonkers surcharge and New York City Unincorporated Business Tax on the city sourced business, while owing no New York City resident tax. All three can be true at once, and almost nobody explains it.

With a substantial two to four family and apartment stock and a majority renting, small landlord Schedule E work is common here, and unlike Brooklyn there is no UBT to think about. Proximity to Connecticut and New Jersey makes multi state filing and the resident credit on Form IT-112-R routine.

How it works

How nonprofit runs

Four stages. Most of the value sits in the first two, before anything is filed.

  1. Check the filing history

    Which 990 was filed, when, and whether exempt status is still intact.

  2. Straighten the records

    Funds separated, allocations documented and balances reconciled.

  3. Prepare the return

    The 990 and anything it brings with it, including the 990-T.

  4. Report to the board

    Statements and a 990 the board can read without a translator.

Questions

Frequently asked questions

How much is the Yonkers tax?

For residents it is a surcharge of 16.75% of your net New York State tax, so it scales with your state liability rather than being a separate rate on income. If you work in Yonkers but live elsewhere, it is a 0.50% earnings tax on the Yonkers sourced wages, filed on Form Y-203.

I live in Yonkers and work in Manhattan. Do I pay New York City tax?

No. The city commuter tax was repealed in 1999 and struck down for everyone in 2000. You pay state tax and the Yonkers resident surcharge. If you also run an unincorporated business carried on within the city, the city Unincorporated Business Tax can still apply to that business.

Is the casino coming to Yonkers?

No. MGM withdrew the Empire City bid for a downstate casino license in October 2025, and the three licenses went to Resorts World Queens, Bally’s Bronx and Metropolitan Park. Empire City continues to operate as a video lottery racino at Yonkers Raceway. It is worth saying because a lot of older material still assumes otherwise.

What happens if we missed a 990?

Three consecutive missed years revokes exempt status automatically. One missed year is fixable and worth fixing immediately. If status has already been revoked, reinstatement is possible but it is a longer road.

Which 990 do we file?

It depends on gross receipts and total assets. Small organizations may only need the 990-N, which is short. We would rather confirm the threshold than have you file the wrong one.

Can you help us set up a new nonprofit?

Yes, on the structuring and accounting side, working with whoever handles the legal formation and the exemption application.

Also in Yonkers

Our other services here

Talk to us about nonprofit in Yonkers

Book a time online, or call the Riverdale office directly.

Nearest office

Riverdale Office
331 College Rd, Bronx, NY 10471

Office hours

Sunday to Friday, 11am to 8pm Eastern.
Closed Saturday.